Changes in version 0.7-4 (2023-09-02) * greport-package.r: change @aliases greport package-greport to greport-package Changes in version 0.7-3 (2022-10-17) * changed email address for maintainer Changes in version 0.7-2 (2020-02-09) * dReport: added exclude1 argument, default to TRUE (see Hmisc::ggplot.summaryP) * Require Hmisc >= 4.0-0, rms >= 5.0-0 * accrualReport: changed target enrollment/randomization curves to thick grayscale lines * nriskReport: added more plots when id is present but groups is not * maskVal, maskDframe: new functions for masking variables for test reports * accrualReport: added number sites randomizing, number subjects randomized per randomizing size, mean and median days to randomization from enrollment * dReport help file: removed unused dots argument Changes in version 0.7-1 (2016-04-08) * dReport: added stable argument for suppressing backup tables * startPlot: stopped suppressing arguments for spar that are not in par * survReport: added opts argument, mylim argument * survReport: reduced font size of ylab when long, added markevent argument * accrualReport: added studynos argument * greport.sty: attach ocg-p LaTeX package so that ocgtools no longer needs ocg, asymptote, acrotex * greport.sty: added poptype=3 to use tiny tables and no actual pop-ups * survReport: changed default markevent to TRUE * dReport: passed continuous argument to summaryM Changes in version 0.7-0 (2015-12-02) * survReport: plot cumulative incidence estimates when left hand side of formula contains Surv objects for competing risks * upFirst: removed function; added to Hmisc Changes in version 0.6-0 (2015-08-30) * accrualReport: put zoomed cumulative distribution on same graph as regular * exReport: added option plotExRemain to suppress 2-panel dot chart, solved problem with collisions of labels on vertical cumulative exclusion plot * NAMESPACE: import base functions used * exReport: avoided collisions in vertical dot chart, excluded actually randomized subjects from exclusion frequencies * exReport: fixed exclusion table so that even though exclusion counts for numerators exclude any randomized subjects, special conditions (indented) use all enrolled subjects in the denominator Changes in version 0.5-3 (2015-04-20) * putFig: add \clearpage after every appendix table * exReport: fine-tuned vertical dot plot * dReport: rotated strip labels * Added new greport option nontx.col and use that in other functions, for non-treatment groups * dReport: changed strip label font size * dReport: run ggplot.summaryP output through colorFacet (new in Hmisc) * upFirst: leave all words with > 1 upper case letter unchanged (for acronyms) * accrualReport: changed denominator to randomized subjects for table corresponding to box plots of days to randomization * all reporting functions: use upFirst(lower=TRUE) for captions * appsection: new function * sampleFrac: capped fraction at 1.0, issued warning if > 1 and assumes this indicates that analysis is to compare randomized with non-randomized subjects * test.Rnw, report.Rnw: switch to using changepage style instead of chngpage * Misc: use gsub instead of translate() * survReport: added aehaz argument, fixed caption for when differences don't apply (no strata) * startPlot: ignored non-par parameters in ... * survReport: changed default y.n.risk to 0 (used if what='1-S') * exReport: added short caption when using app * survReport: added times argument * nriskReport: changed any(duplicated()) to anyDuplicated() Changes in version 0.5-2 (2014-11-21) * accrualReport: axis.Date was not positioning axis labels containing only 4-digit years at Jan 1 so wrote customized axisDate function * Better escaping of special characters * dReport: handle special characters in table captions * dReport: added append=TRUE in call to latex() for proportions * exReport: added apptail argument for appendix table of IDs * All functions: checked that panel and subpanel containing only legal LaTeX macro name characters (A-Z a-z -); . are auto-removed Changes in version 0.5-1 (2014-04-15) * survReport: changed to use npsurv instead of survfit.formula * exReport: changed order of output so that analysis of randomized patients marked for exclusions appears last; use LaTeX chngpage package to allow detailed table to go into left margin so as to be centered on page * exReport: added adjustwidth argument * accrualReport: allowed enrollment target N to be omitted * exReport: fine tuning * nriskReport: new report to show number of subjects still being followed at each day * Merge: added support for data.table * nriskReport: added id() variable * exReport: fixed bug when there is an exclusion with 0 frequency * accrualReport: improved graphics formatting, added minrand argument * accrualReport: added enrollmax argument, clarified notation * exReport: added ignoreExcl, ignoreRand arguments * all: added greportOption texwhere; default is 'gentex'; can specify texwhere='' to write non-appendix LaTeX code to console as for knitr * dReport: for byx for discrete Y, sense when Y is binary and use Wilson interval instead of bootstrap; adjust SE using confidence interval if proportion is 0 or 1 * dReport: changed discreteness non-binary classification to use maximum number of unique values or Y instead of minimum * add globalVariables call to nriskReport