Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification. Beaulieu and O'Meara (2016) <doi:10.1093/sysbio/syw022>.
| Version: | 2.1.11 |
| Depends: | ape, deSolve, GenSA, subplex, nloptr |
| Imports: | parallel, phytools, data.table, igraph, methods, diversitree, paleotree, plotrix, geiger, phangorn, TreeSim, corHMM |
| Suggests: | testthat, knitr, rmarkdown, markdown |
| Published: | 2023-02-11 |
| DOI: | 10.32614/CRAN.package.hisse |
| Author: | Jeremy Beaulieu [aut, cre], Brian O'Meara [aut], Daniel Caetano [aut], James Boyko [aut], Thais Vasconcelos [aut] |
| Maintainer: | Jeremy Beaulieu <jmbeauli at uark.edu> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | yes |
| Citation: | hisse citation info |
| In views: | Phylogenetics |
| CRAN checks: | hisse results |
| Package source: | hisse_2.1.11.tar.gz |
| Windows binaries: | r-devel: hisse_2.1.11.zip, r-release: hisse_2.1.11.zip, r-oldrel: hisse_2.1.11.zip |
| macOS binaries: | r-devel (arm64): hisse_2.1.11.tgz, r-release (arm64): hisse_2.1.11.tgz, r-oldrel (arm64): hisse_2.1.11.tgz, r-devel (x86_64): hisse_2.1.11.tgz, r-release (x86_64): hisse_2.1.11.tgz, r-oldrel (x86_64): hisse_2.1.11.tgz |
| Old sources: | hisse archive |
| Reverse suggests: | fishtree |
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