ipolygrowth: Individual Growth Curve Parameter Calculation using Polynomial Functions

Calculation of key bacterial growth curve parameters using fourth degree polynomial functions. Six growth curve parameters are provided including peak growth rate, doubling time, lag time, maximum growth, and etc. 'ipolygrowth' takes time series data from individual biological samples (with technical replicates) or multiple samples.

Version: 0.1.2
Depends: R (≥ 3.4.0)
Imports: dplyr, magrittr, rlang, tidyr, tidyselect
Suggests: knitr, rmarkdown, testthat (≥ 3.0.0), growthrates, kableExtra, ggplot2
Published: 2023-07-20
Author: Jifan Wang ORCID iD [aut, cre], Kathryn Barger [aut]
Maintainer: Jifan Wang <jifan.wang at tufts.edu>
BugReports: https://github.com/kivanvan/ipolygrowth/issues
License: GPL (≥ 3)
URL: https://github.com/kivanvan/ipolygrowth
NeedsCompilation: no
Materials: README
CRAN checks: ipolygrowth results

Documentation:

Reference manual: ipolygrowth.pdf
Vignettes: Using ipolygrowth for bacterial growth estimation

Downloads:

Package source: ipolygrowth_0.1.2.tar.gz
Windows binaries: r-devel: ipolygrowth_0.1.2.zip, r-release: ipolygrowth_0.1.2.zip, r-oldrel: ipolygrowth_0.1.2.zip
macOS binaries: r-release (arm64): ipolygrowth_0.1.2.tgz, r-oldrel (arm64): ipolygrowth_0.1.2.tgz, r-release (x86_64): ipolygrowth_0.1.2.tgz

Linking:

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