likelihood.model 1.0.0
Breaking Changes
- Removed
likelihood_contr_model (R6 contribution-based
model builder). This functionality has been extracted to the new
likelihood.contr package.
- Removed
likelihood_name() (named distribution wrapper).
Use likelihood.contr::contr_name() instead.
- Removed
weibull_uncensored /
likelihood_exact_weibull (Weibull example model). Use
likelihood.contr for Weibull likelihood contributions.
- Removed
observed_info() generic (was deprecated in
v0.10.0). Use -hess_loglik(model)(df, par) or
observed_fim() on MLE results.
- Dropped
R6 from Imports (no longer needed).
mvtnorm moved to Suggests (only needed for multivariate
sampler()).
- Dropped
dplyr and tibble from
Suggests.
Notes
- The core framework (
loglik, score,
hess_loglik, fim, fit, Fisherian
inference, lrt, fisher_mle,
fisher_boot) is unchanged.
exponential_lifetime remains as the reference
implementation.
- For contribution-based models with heterogeneous observation types,
use the
likelihood.contr package.
likelihood.model 0.10.0
Breaking Changes
observed_info() is deprecated; use
-hess_loglik(model)(df, par) or observed_fim()
on MLE results
likelihood_exact_weibull() is deprecated in favor of
weibull_uncensored()
- Unrecognized censoring values in
loglik.likelihood_name_model() now error instead of warning
(silently returning 0 produced incorrect MLEs during optimization)
- Removed redundant R6 instance methods
$loglik(),
$score(), $hess_loglik() from
likelihood_contr_model; use the S3 generics
loglik(model), score(model),
hess_loglik(model) instead
mvtnorm moved from Imports to Suggests (only needed for
multivariate sampler())
Bug Fixes
- Fixed
fim.likelihood_model() Monte Carlo estimator:
replaced biased outer-product-of-scores with negative expected Hessian
approach, which is unbiased at any parameter value
- Fixed
fim.likelihood_model() not forwarding
... to hess_loglik, and added NaN/Inf guard to
prevent silent corruption of FIM estimates
- Fixed
... not forwarded in
likelihood_contr_model numerical fallback for
score and hess_loglik
- Fixed
parent.frame() in
likelihood_contr_model$new() capturing R6 internals instead
of the caller’s environment
- Fixed
sampler.likelihood_model() ...
scoping bug in bootstrap statistic function
- Added optimizer-friendly boundary guards to
weibull_uncensored: loglik returns penalty,
score/hess_loglik return zeros for invalid
parameters (k <= 0 or l <= 0)
- Added input validation in
loglik.likelihood_name_model(): errors with a clear message
when ob_col is missing from the data frame
New Features
- New
rdata.weibull_uncensored() method for generating
Weibull data from the model’s DGP
bias.fisher_mle() now supports optional Monte Carlo
bias estimation when theta and model are
provided; returns zeros (asymptotic result) otherwise
mse.fisher_mle() now forwards model and
n_sim to bias() for MC-based MSE
likelihood_contr_model$new() gains envir
parameter controlling where loglik.<type>,
score.<type>, and
hess_loglik.<type> are looked up
fim.likelihood_model() now adds parameter names to the
output matrix when theta is named, and includes
tryCatch with informative warnings on partial failures
evidence() is now an S3 generic, extensible by model
classes
lrt() returns a proper lrt_result class
with a print method
- New
loglik.likelihood_model and
rdata.likelihood_model default methods provide clear error
messages when a model class doesn’t implement the required concept
methods
likelihood.model 0.9.1
New Features
- Added interval censoring support to
likelihood_name()
via ob_col_upper parameter
- Input validation in
likelihood_name() constructor:
checks that distribution functions exist
- Parameter count validation in
prepare_args_list() with
clear error messages
- Warning on unrecognized censoring values (e.g., typos like
“righ”)
- Auto-switch from Nelder-Mead to BFGS for 1-dimensional
optimization
- New Fisherian inference functions:
support(),
relative_likelihood(), likelihood_interval(),
profile_loglik(), evidence()
- New
exponential_lifetime model with closed-form MLE and
right-censoring support
- New
fisher_mle and fisher_boot result
objects with full S3 method suite
Bug Fixes
- Fixed
rowSums error in
likelihood_contr_model score for single-parameter
models
- Fixed
print.likelihood_model crash when
ob_col is NULL (e.g., for contr models)
algebraic.mle Integration
- New re-exported generics from
algebraic.mle:
params(), nparams(),
observed_fim(), obs(), mse()
- Methods for
fisher_mle objects provide a unified
interface across the likelihood ecosystem
Documentation
- New
algebraic-mle-integration vignette demonstrating
the three-package ecosystem (likelihood.model +
algebraic.mle + algebraic.dist)
- Expanded
likelihood-name-model vignette:
left-censoring, interval censoring, mixed types, Fisherian inference,
multiple distributions
- Expanded
likelihood-contributions vignette: Case 2
inference, single-parameter example, best practices, interpretive prose
for computed results
- New
getting-started vignette with comprehensive
introduction
- New
exponential-lifetime vignette
likelihood.model 0.9.0
- Initial public release with
likelihood_name(),
likelihood_contr_model, and
weibull_uncensored