palaeoverse: Prepare and Explore Data for Palaeobiological Analyses

Provides functionality to support data preparation and exploration for palaeobiological analyses, improving code reproducibility and accessibility. The wider aim of 'palaeoverse' is to bring the palaeobiological community together to establish agreed standards. The package currently includes functionality for data cleaning, binning (time and space), exploration, summarisation and visualisation. Reference datasets (i.e. Geological Time Scales <https://stratigraphy.org/chart>) and auxiliary functions are also provided. Details can be found in: Jones et al., (2023) <doi:10.1111/2041-210X.14099>.

Version: 1.4.0
Depends: R (≥ 4.0)
Imports: stats, utils, graphics, methods, curl, ape, sf, stringdist, geosphere, h3jsr (≥ 1.3.0), httr, pbapply, lifecycle
Suggests: rmarkdown, knitr, testthat (≥ 3.0.0), vdiffr (≥ 1.0.0), paleotree, phytools, covr
Published: 2024-10-14
DOI: 10.32614/CRAN.package.palaeoverse
Author: Lewis A. Jones ORCID iD [aut, cre], William Gearty ORCID iD [aut], Bethany J. Allen ORCID iD [aut], Kilian Eichenseer ORCID iD [aut], Christopher D. Dean ORCID iD [aut], Sofia Galvan ORCID iD [ctb], Miranta Kouvari ORCID iD [ctb], Pedro L. Godoy ORCID iD [ctb], Cecily Nicholl ORCID iD [ctb], Lucas Buffan ORCID iD [ctb], Erin M. Dillon ORCID iD [ctb], Joseph T. Flannery-Sutherland ORCID iD [aut], A. Alessandro Chiarenza ORCID iD [ctb]
Maintainer: Lewis A. Jones <LewisA.Jones at outlook.com>
BugReports: https://github.com/palaeoverse/palaeoverse/issues
License: GPL (≥ 3)
URL: https://palaeoverse.palaeoverse.org, https://github.com/palaeoverse/palaeoverse, https://palaeoverse.org
NeedsCompilation: no
Language: en-GB
Citation: palaeoverse citation info
Materials: README NEWS
In views: Paleontology
CRAN checks: palaeoverse results

Documentation:

Reference manual: palaeoverse.pdf
Vignettes: Latitudinal trends in Phanerozoic reefs (source)
Contributing to palaeoverse: structure and standards (source, R code)
Alpha diversity and geographic range size of Carboniferous and Permian tetrapods (source)

Downloads:

Package source: palaeoverse_1.4.0.tar.gz
Windows binaries: r-devel: palaeoverse_1.4.0.zip, r-release: palaeoverse_1.4.0.zip, r-oldrel: palaeoverse_1.4.0.zip
macOS binaries: r-devel (arm64): palaeoverse_1.4.0.tgz, r-release (arm64): palaeoverse_1.4.0.tgz, r-oldrel (arm64): palaeoverse_1.4.0.tgz, r-devel (x86_64): palaeoverse_1.4.0.tgz, r-release (x86_64): palaeoverse_1.4.0.tgz, r-oldrel (x86_64): palaeoverse_1.4.0.tgz
Old sources: palaeoverse archive

Reverse dependencies:

Reverse suggests: deeptime, rmacrostrat, rphylopic

Linking:

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