Changes Version 3.3 - Steffen Moritz

• Fixed small bug with a unwanted print statement in linearRidge

Changes Version 3.2 - Steffen Moritz

• Fixed issue with predict() function: Wrong results, when predicting the training data without newdata argument. When supplying them via newdata, everything seemed fine. (https://github.com/SteffenMoritz/ridge/issues/16) Thanks to Mekala Sundaram for reporting the issue.

Changes Version 3.1 - Steffen Moritz

• Fixes to remain on CRAN

• GitHub Actions as CI Tool

Changes Version 2.7 until 3.0 - Steffen Moritz

• Fixes related to autoconf (needed for passing new CRAN checks)

Changes Version 2.6 - Steffen Moritz

• Readme update

• Fixes to pass CRAN checks

Changes Version 2.5 - Dan Frankowski

• Fix predict bug with factor variables

• Add vcov.ridgeLinear

• Add testthat tests

• Changed documentation partially to roxygen2

Changes Version 2.4 - Steffen Moritz

• bugfix in logisticRidge and linearRidge see: https://github.com/SteffenMoritz/ridge/issues/2

• bugfix to pass cran checks ‘warning: missing template: HAVE_GSL_HEADER autoheader’

• Updated Readme

Changes Version 2.3 - Steffen Moritz

• Some fixed to remain on CRAN and comly with CRAN policy

• Improved Description file

• Changed NEWS file to markup document

Changes Version 2.2 - Steffen Moritz

• Made package CRAN ready again

• Created github repository for the package

• Fixed warning using Wpendantic gcc

• Adapted the DESCRIPTION file to latest CRAN requirements

• Renamed CHANGELOG to NEWS

• NEWS template update

• Changes to .C Method registration

• NAMESPACE fixes

Changes 2014-3-02 - Erika Cule

* Fixed layout of .Rd files

* Added deletion of Makevars to cleanup script

Changes 2012-9-27 - Erika Cule

* Flat text (.txt) data files were moved from ridge/data to ridge/inst/extdata 
(in the source, which becomes ridge/extdata in the installed package). The .txt files 
should be in inst/extdata because they files are used by the package examples 
  (albeit in not run sections), as described in Writing R Extensions 1.1.5 Data in packages.

* Some users were reporting problems installing the package on some Linux OS. configure 
  has been modified to fix this 
  problem.

Changes 2012-8-21 - Erika Cule

* Bug fix in src/commonFunctions.c

Changes 2012-8-21 - Erika Cule

* Added configure.ac so that package will install if GSL >= 1.14 is not available 
  (with linearRidgeGenotypes, logisticRidgeGenotypes, linearRidgeGenotypesPredict and 
  logisticRidgeGenotypesPredict disabled). 
  
* configure.ac detects whether openblas is available and if it is found, links to that. 
This speeds up computation. (http://xianyi.github.com/OpenBLAS/)

Changes 2012-7-19 Erika Cule

• fixed a bug in linearRidge when scaling = “none”

• added functions linearRidgeGenotypes and logisticRidgeGenotypes and their predicting counterparts linearRidgeGenotypesPredict and logisticRidgeGenotypespredict. These functions fit linear and logistic ridge regression models for genome-wide SNP data, optionally automatically choosing the ridge parameter

  • minor bug fix: “Intercept” now prints as “(Intercept)” (as is the case for lm and glm models)