scregclust: Reconstructing the Regulatory Programs of Target Genes in scRNA-Seq Data
Implementation of the scregclust algorithm described in Larsson, Held, et al. (2024) <doi:10.1038/s41467-024-53954-3> which reconstructs regulatory programs of target genes in scRNA-seq data. Target genes are clustered into modules and each module is associated with a linear model describing the regulatory program.
| Version: | 0.2.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | Matrix, stats, methods, utils, reshape, igraph, graphics, grid, cli, prettyunits, ggplot2, rlang, Rcpp (≥ 1.0.8) |
| LinkingTo: | Rcpp, RcppEigen |
| Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0), Seurat (≥ 5.0.0), glmGamPoi, hdf5r |
| Published: | 2024-12-06 |
| DOI: | 10.32614/CRAN.package.scregclust |
| Author: | Felix Held  [aut,
cre],
Ida Larsson [aut],
Sven Nelander
[aut],
André Armatowski [ctb] |
| Maintainer: | Felix Held <felix.held at gmail.com> |
| BugReports: | https://github.com/scmethods/scregclust/issues |
| License: | GPL (≥ 3) |
| URL: | https://scmethods.github.io/scregclust/, https://github.com/scmethods/scregclust/ |
| NeedsCompilation: | yes |
| Citation: | scregclust citation info |
| Materials: | README NEWS |
| CRAN checks: | scregclust results |
Documentation:
| Reference manual: | scregclust.pdf |
| Vignettes: |
Demonstration of workflow (source, R code) |
Downloads:
| Package source: | scregclust_0.2.0.tar.gz |
| Windows binaries: | r-devel: scregclust_0.2.0.zip, r-release: scregclust_0.2.0.zip, r-oldrel: scregclust_0.2.0.zip |
| macOS binaries: | r-devel (arm64): scregclust_0.2.0.tgz, r-release (arm64): scregclust_0.2.0.tgz, r-oldrel (arm64): scregclust_0.2.0.tgz, r-devel (x86_64): scregclust_0.2.0.tgz, r-release (x86_64): scregclust_0.2.0.tgz, r-oldrel (x86_64): scregclust_0.2.0.tgz |
| Old sources: | scregclust archive |
Linking:
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