treediff: Testing Differences Between Families of Trees

Perform test to detect differences in structure between families of trees. The method is based on cophenetic distances and aggregated Student's tests.

Version: 0.2.1
Depends: R (≥ 4.0.0)
Imports: adjclust, BiocGenerics, csaw, data.table, dplyr, InteractionSet, limma, methods, stats, SummarizedExperiment, reshape2, testthat, rlang, HiCDOC, purrr
Suggests: knitr, rmarkdown
Published: 2024-02-17
Author: Nathalie Vialaneix ORCID iD [aut, cre], Gwendaelle Cardenas [aut], Marie Chavent [aut], Sylvain Foissac [aut], Pierre Neuvial ORCID iD [aut], Nathanael Randriamihamison [aut]
Maintainer: Nathalie Vialaneix <nathalie.vialaneix at inrae.fr>
BugReports: https://forgemia.inra.fr/scales/treediff/-/issues
License: GPL (≥ 3)
URL: https://forgemia.inra.fr/scales/treediff
NeedsCompilation: no
Citation: treediff citation info
Materials: NEWS
CRAN checks: treediff results

Documentation:

Reference manual: treediff.pdf

Downloads:

Package source: treediff_0.2.1.tar.gz
Windows binaries: r-devel: treediff_0.2.1.zip, r-release: treediff_0.2.1.zip, r-oldrel: treediff_0.2.1.zip
macOS binaries: r-release (arm64): treediff_0.1.tgz, r-oldrel (arm64): treediff_0.1.tgz, r-release (x86_64): treediff_0.1.tgz
Old sources: treediff archive

Linking:

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