CRAN Package Check Results for Package adjustedCurves

Last updated on 2024-04-18 08:54:21 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.11.1 16.22 709.40 725.62 OK
r-devel-linux-x86_64-debian-gcc 0.11.1 11.37 493.27 504.64 OK
r-devel-linux-x86_64-fedora-clang 0.11.1 844.57 NOTE
r-devel-linux-x86_64-fedora-gcc 0.11.1 888.46 OK
r-prerel-macos-arm64 0.11.1 233.00 OK
r-prerel-macos-x86_64 0.11.1 677.00 OK
r-prerel-windows-x86_64 0.11.1 15.00 502.00 517.00 OK
r-patched-linux-x86_64 0.11.0 14.98 578.29 593.27 ERROR
r-release-linux-x86_64 0.11.1 16.05 669.69 685.74 OK
r-release-macos-arm64 0.11.1 236.00 OK
r-release-macos-x86_64 0.11.1 532.00 OK
r-release-windows-x86_64 0.11.1 18.00 672.00 690.00 OK
r-oldrel-macos-arm64 0.11.1 218.00 OK
r-oldrel-windows-x86_64 0.11.1 20.00 679.00 699.00 OK

Check Details

Version: 0.11.1
Check: Rd cross-references
Result: NOTE Undeclared packages ‘timereg’, ‘rms’, ‘ranger’ in Rd xrefs Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.11.0
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘concrete’ Flavor: r-patched-linux-x86_64

Version: 0.11.0
Check: examples
Result: ERROR Running examples in ‘adjustedCurves-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: cif_tmle > ### Title: Targeted Maximum Likelihood Estimation for Continuous Time > ### Competing Events Data > ### Aliases: cif_tmle > > ### ** Examples > > library(adjustedCurves) > > data <- sim_confounded_crisk(n=100) > data$group <- factor(data$group) > > # for a single point in time using only one model for both > # the treatment mechanism and outcome mechanism > out <- adjustedcif(data=data, + variable="group", + ev_time="time", + event="event", + cause=1, + treatment_model=c("SL.glm"), + outcome_model=list(Surv(time, status==1) ~ .), + times=c(0.5), + conf_int=TRUE, + method="tmle") Loading required namespace: concrete Failed with error: ‘there is no package called ‘concrete’’ Error in loadNamespace(x) : there is no package called ‘concrete’ Calls: adjustedcif ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted Flavor: r-patched-linux-x86_64

Version: 0.11.0
Check: tests
Result: ERROR Running ‘testthat.R’ [356s/439s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(adjustedCurves) > > library(dplyr) Attaching package: 'dplyr' The following objects are masked from 'package:stats': filter, lag The following objects are masked from 'package:base': intersect, setdiff, setequal, union > > library(testthat) Attaching package: 'testthat' The following object is masked from 'package:dplyr': matches > library(vdiffr) > library(survival) > library(ggplot2) > library(Matching) Loading required package: MASS Attaching package: 'MASS' The following object is masked from 'package:dplyr': select ## ## Matching (Version 4.10-14, Build Date: 2023-09-13) ## See https://www.jsekhon.com for additional documentation. ## Please cite software as: ## Jasjeet S. Sekhon. 2011. ``Multivariate and Propensity Score Matching ## Software with Automated Balance Optimization: The Matching package for R.'' ## Journal of Statistical Software, 42(7): 1-52. ## > library(WeightIt) > library(prodlim) > library(MASS) > library(tidyr) Attaching package: 'tidyr' The following object is masked from 'package:testthat': matches > library(riskRegression) riskRegression version 2023.12.21 > library(pec) Attaching package: 'pec' The following objects are masked from 'package:riskRegression': ipcw, selectCox > library(geepack) > library(nnet) > library(cmprsk) > library(eventglm) Attaching package: 'eventglm' The following objects are masked from 'package:prodlim': leaveOneOut.competing.risks, leaveOneOut.survival The following objects are masked from 'package:survival': colon, mgus2 > library(rmarkdown) > library(mice) Attaching package: 'mice' The following object is masked from 'package:stats': filter The following objects are masked from 'package:base': cbind, rbind > > test_check("adjustedCurves") Loading required namespace: pammtools [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "x1" "x2" "x3" "x4" "x5" "x6" [1] "group1" "x1" "x2" [1] "group1" "x1" "x2" [1] "group1" "x1" "x2" [1] "group1" "x1" "x2" Loading required namespace: concrete Failed with error: 'there is no package called 'concrete'' Loading required namespace: concrete Failed with error: 'there is no package called 'concrete'' Loading required namespace: concrete Failed with error: 'there is no package called 'concrete'' Loading required namespace: concrete Failed with error: 'there is no package called 'concrete'' Loading required namespace: doParallel starting worker pid=936047 on localhost:11129 at 19:07:48.278 starting worker pid=936048 on localhost:11129 at 19:07:48.284 Loading required package: adjustedCurves Loading required package: adjustedCurves loaded adjustedCurves and set parent environment loaded adjustedCurves and set parent environment Attaching package: ‘mice’ The following object is masked from ‘package:stats’: filter The following objects are masked from ‘package:base’: cbind, rbind Loading required package: survival Attaching package: ‘survival’ The following objects are masked from ‘package:eventglm’: colon, mgus2 Loading required package: prodlim Attaching package: ‘mice’ The following object is masked from ‘package:stats’: filter The following objects are masked from ‘package:base’: cbind, rbind Attaching package: ‘prodlim’ The following objects are masked from ‘package:eventglm’: leaveOneOut.competing.risks, leaveOneOut.survival Loading required package: survival Attaching package: ‘survival’ The following objects are masked from ‘package:eventglm’: colon, mgus2 Loading required package: prodlim Attaching package: ‘prodlim’ The following objects are masked from ‘package:eventglm’: leaveOneOut.competing.risks, leaveOneOut.survival riskRegression version 2023.12.21 Attaching package: ‘riskRegression’ The following objects are masked from ‘package:pec’: ipcw, selectCox Loading required package: MASS ## ## Matching (Version 4.10-14, Build Date: 2023-09-13) ## See https://www.jsekhon.com for additional documentation. ## Please cite software as: ## Jasjeet S. Sekhon. 2011. ``Multivariate and Propensity Score Matching ## Software with Automated Balance Optimization: The Matching package for R.'' ## Journal of Statistical Software, 42(7): 1-52. ## Attaching package: ‘testthat’ The following object is masked from ‘package:tidyr’: matches Attaching package: ‘dplyr’ The following object is masked from ‘package:testthat’: matches The following object is masked from ‘package:MASS’: select The following objects are masked from ‘package:stats’: filter, lag The following objects are masked from ‘package:base’: intersect, setdiff, setequal, union Loading required package: foreach Loading required package: rngtools riskRegression version 2023.12.21 Attaching package: ‘riskRegression’ The following objects are masked from ‘package:pec’: ipcw, selectCox Loading required package: MASS ## ## Matching (Version 4.10-14, Build Date: 2023-09-13) ## See https://www.jsekhon.com for additional documentation. ## Please cite software as: ## Jasjeet S. Sekhon. 2011. ``Multivariate and Propensity Score Matching ## Software with Automated Balance Optimization: The Matching package for R.'' ## Journal of Statistical Software, 42(7): 1-52. ## Attaching package: ‘testthat’ The following object is masked from ‘package:tidyr’: matches Attaching package: ‘dplyr’ The following object is masked from ‘package:testthat’: matches The following object is masked from ‘package:MASS’: select The following objects are masked from ‘package:stats’: filter, lag The following objects are masked from ‘package:base’: intersect, setdiff, setequal, union Loading required package: foreach Loading required package: rngtools starting worker pid=939616 on localhost:11129 at 19:07:58.065 starting worker pid=939617 on localhost:11129 at 19:07:58.187 Loading required package: adjustedCurves loaded adjustedCurves and set parent environment Loading required package: adjustedCurves loaded adjustedCurves and set parent environment Attaching package: ‘mice’ The following object is masked from ‘package:stats’: filter The following objects are masked from ‘package:base’: cbind, rbind Attaching package: ‘mice’ Loading required package: survival The following object is masked from ‘package:stats’: filter The following objects are masked from ‘package:base’: cbind, rbind Attaching package: ‘survival’ The following objects are masked from ‘package:eventglm’: colon, mgus2 Loading required package: prodlim Loading required package: survival Attaching package: ‘survival’ The following objects are masked from ‘package:eventglm’: colon, mgus2 Loading required package: prodlim Attaching package: ‘prodlim’ The following objects are masked from ‘package:eventglm’: leaveOneOut.competing.risks, leaveOneOut.survival Attaching package: ‘prodlim’ The following objects are masked from ‘package:eventglm’: leaveOneOut.competing.risks, leaveOneOut.survival riskRegression version 2023.12.21 Attaching package: ‘riskRegression’ The following objects are masked from ‘package:pec’: ipcw, selectCox Loading required package: MASS ## ## Matching (Version 4.10-14, Build Date: 2023-09-13) ## See https://www.jsekhon.com for additional documentation. ## Please cite software as: ## Jasjeet S. Sekhon. 2011. ``Multivariate and Propensity Score Matching ## Software with Automated Balance Optimization: The Matching package for R.'' ## Journal of Statistical Software, 42(7): 1-52. ## riskRegression version 2023.12.21 Attaching package: ‘riskRegression’ The following objects are masked from ‘package:pec’: ipcw, selectCox Attaching package: ‘testthat’ The following object is masked from ‘package:tidyr’: matches Attaching package: ‘dplyr’ The following object is masked from ‘package:testthat’: matches The following object is masked from ‘package:MASS’: select The following objects are masked from ‘package:stats’: filter, lag The following objects are masked from ‘package:base’: intersect, setdiff, setequal, union Loading required package: foreach Loading required package: rngtools Loading required package: MASS ## ## Matching (Version 4.10-14, Build Date: 2023-09-13) ## See https://www.jsekhon.com for additional documentation. ## Please cite software as: ## Jasjeet S. Sekhon. 2011. ``Multivariate and Propensity Score Matching ## Software with Automated Balance Optimization: The Matching package for R.'' ## Journal of Statistical Software, 42(7): 1-52. ## Attaching package: ‘testthat’ The following object is masked from ‘package:tidyr’: matches Attaching package: ‘dplyr’ The following object is masked from ‘package:testthat’: matches The following object is masked from ‘package:MASS’: select The following objects are masked from ‘package:stats’: filter, lag The following objects are masked from ‘package:base’: intersect, setdiff, setequal, union Loading required package: foreach Loading required package: rngtools Warning message: In coxph.fit(X, Y, istrat, offset, init, control, weights = weights, : Loglik converged before variable 1,2 ; coefficient may be infinite. starting worker pid=942923 on localhost:11129 at 19:08:07.247 starting worker pid=942922 on localhost:11129 at 19:08:07.279 Loading required package: adjustedCurves loaded adjustedCurves and set parent environment Loading required package: adjustedCurves loaded adjustedCurves and set parent environment Attaching package: ‘mice’ The following object is masked from ‘package:stats’: filter The following objects are masked from ‘package:base’: cbind, rbind Loading required package: survival Attaching package: ‘survival’ The following objects are masked from ‘package:eventglm’: colon, mgus2 Attaching package: ‘mice’ The following object is masked from ‘package:stats’: filter The following objects are masked from ‘package:base’: cbind, rbind Loading required package: prodlim Loading required package: survival Attaching package: ‘survival’ The following objects are masked from ‘package:eventglm’: colon, mgus2 Loading required package: prodlim Attaching package: ‘prodlim’ The following objects are masked from ‘package:eventglm’: leaveOneOut.competing.risks, leaveOneOut.survival Attaching package: ‘prodlim’ The following objects are masked from ‘package:eventglm’: leaveOneOut.competing.risks, leaveOneOut.survival riskRegression version 2023.12.21 Attaching package: ‘riskRegression’ The following objects are masked from ‘package:pec’: ipcw, selectCox riskRegression version 2023.12.21 Attaching package: ‘riskRegression’ The following objects are masked from ‘package:pec’: ipcw, selectCox Loading required package: MASS ## ## Matching (Version 4.10-14, Build Date: 2023-09-13) ## See https://www.jsekhon.com for additional documentation. ## Please cite software as: ## Jasjeet S. Sekhon. 2011. ``Multivariate and Propensity Score Matching ## Software with Automated Balance Optimization: The Matching package for R.'' ## Journal of Statistical Software, 42(7): 1-52. ## Loading required package: MASS ## ## Matching (Version 4.10-14, Build Date: 2023-09-13) ## See https://www.jsekhon.com for additional documentation. ## Please cite software as: ## Jasjeet S. Sekhon. 2011. ``Multivariate and Propensity Score Matching ## Software with Automated Balance Optimization: The Matching package for R.'' ## Journal of Statistical Software, 42(7): 1-52. ## Attaching package: ‘testthat’ The following object is masked from ‘package:tidyr’: matches Attaching package: ‘dplyr’ The following object is masked from ‘package:testthat’: matches The following object is masked from ‘package:MASS’: select The following objects are masked from ‘package:stats’: filter, lag The following objects are masked from ‘package:base’: intersect, setdiff, setequal, union Loading required package: foreach Attaching package: ‘testthat’ The following object is masked from ‘package:tidyr’: matches Loading required package: rngtools Attaching package: ‘dplyr’ The following object is masked from ‘package:testthat’: matches The following object is masked from ‘package:MASS’: select The following objects are masked from ‘package:stats’: filter, lag The following objects are masked from ‘package:base’: intersect, setdiff, setequal, union Loading required package: foreach Loading required package: rngtools starting worker pid=945947 on localhost:11129 at 19:08:15.001 starting worker pid=945945 on localhost:11129 at 19:08:15.105 Loading required package: adjustedCurves loaded adjustedCurves and set parent environment Loading required package: adjustedCurves loaded adjustedCurves and set parent environment Attaching package: ‘mice’ The following object is masked from ‘package:stats’: filter The following objects are masked from ‘package:base’: cbind, rbind Loading required package: survival Attaching package: ‘survival’ The following objects are masked from ‘package:eventglm’: colon, mgus2 Loading required package: prodlim Attaching package: ‘mice’ The following object is masked from ‘package:stats’: filter The following objects are masked from ‘package:base’: cbind, rbind Attaching package: ‘prodlim’ The following objects are masked from ‘package:eventglm’: leaveOneOut.competing.risks, leaveOneOut.survival Loading required package: survival Attaching package: ‘survival’ The following objects are masked from ‘package:eventglm’: colon, mgus2 Loading required package: prodlim Attaching package: ‘prodlim’ The following objects are masked from ‘package:eventglm’: leaveOneOut.competing.risks, leaveOneOut.survival riskRegression version 2023.12.21 Attaching package: ‘riskRegression’ The following objects are masked from ‘package:pec’: ipcw, selectCox Loading required package: MASS ## ## Matching (Version 4.10-14, Build Date: 2023-09-13) ## See https://www.jsekhon.com for additional documentation. ## Please cite software as: ## Jasjeet S. Sekhon. 2011. ``Multivariate and Propensity Score Matching ## Software with Automated Balance Optimization: The Matching package for R.'' ## Journal of Statistical Software, 42(7): 1-52. ## Attaching package: ‘testthat’ The following object is masked from ‘package:tidyr’: matches Attaching package: ‘dplyr’ The following object is masked from ‘package:testthat’: matches The following object is masked from ‘package:MASS’: select The following objects are masked from ‘package:stats’: filter, lag The following objects are masked from ‘package:base’: intersect, setdiff, setequal, union Loading required package: foreach Loading required package: rngtools riskRegression version 2023.12.21 Attaching package: ‘riskRegression’ The following objects are masked from ‘package:pec’: ipcw, selectCox Loading required package: MASS ## ## Matching (Version 4.10-14, Build Date: 2023-09-13) ## See https://www.jsekhon.com for additional documentation. ## Please cite software as: ## Jasjeet S. Sekhon. 2011. ``Multivariate and Propensity Score Matching ## Software with Automated Balance Optimization: The Matching package for R.'' ## Journal of Statistical Software, 42(7): 1-52. ## Attaching package: ‘testthat’ The following object is masked from ‘package:tidyr’: matches Attaching package: ‘dplyr’ The following object is masked from ‘package:testthat’: matches The following object is masked from ‘package:MASS’: select The following objects are masked from ‘package:stats’: filter, lag The following objects are masked from ‘package:base’: intersect, setdiff, setequal, union Loading required package: foreach Loading required package: rngtools Warning messages: 1: In coxph.fit(X, Y, istrat, offset, init, control, weights = weights, : Ran out of iterations and did not converge 2: In coxph.fit(X, Y, istrat, offset, init, control, weights = weights, : Loglik converged before variable 1 ; coefficient may be infinite. 3: In ate_checkArgs(call = call, object.event = object.event, object.censor = object.censor, : Rare event 4: In predict.CauseSpecificCox(object = object, newdata = newdata, : Estimated risk outside the range [0,1]. Consider setting the argument 'product.limit' to FALSE. 5: In predict.CauseSpecificCox(object = object, newdata = newdata, : Estimated risk outside the range [0,1]. Consider setting the argument 'product.limit' to FALSE. 6: In predict.CauseSpecificCox(object = object, newdata = newdata, : Estimated risk outside the range [0,1]. Consider setting the argument 'product.limit' to FALSE. Warning messages: 1: In coxph.fit(X, Y, istrat, offset, init, control, weights = weights, : Loglik converged before variable 1 ; coefficient may be infinite. 2: In ate_checkArgs(call = call, object.event = object.event, object.censor = object.censor, : Rare event 3: In predictCoxPL(object = object, newdata = newdata, times = times, : Estimated survival outside the range [0,1]. Consider using predictCox instead of predictCoxPL. Loading required namespace: ggpp Loading required namespace: concrete Failed with error: 'there is no package called 'concrete'' Loading required namespace: concrete Failed with error: 'there is no package called 'concrete'' Loading required namespace: concrete Failed with error: 'there is no package called 'concrete'' Loading required namespace: concrete Failed with error: 'there is no package called 'concrete'' [ FAIL 8 | WARN 10 | SKIP 135 | PASS 1608 ] ══ Skipped tests (135) ═════════════════════════════════════════════════════════ • On CRAN (135): 'test_adjusted_curve_test.r:45:3', 'test_adjusted_curve_test.r:91:3', 'test_adjusted_curve_test.r:137:3', 'test_adjusted_curve_test.r:183:3', 'test_adjustedcif.method_S3.r:16:3', 'test_adjustedcif.method_S3.r:20:3', 'test_adjustedcif_S3.r:18:3', 'test_adjustedcif_S3.r:22:3', 'test_adjustedcif_S3.r:27:3', 'test_adjustedcif_S3.r:32:3', 'test_adjustedcif_S3.r:37:3', 'test_adjustedcif_S3.r:42:3', 'test_adjustedcif_S3.r:47:3', 'test_adjustedcif_S3.r:52:3', 'test_adjustedcif_S3.r:57:3', 'test_adjustedcif_S3.r:62:3', 'test_adjustedcif_S3.r:68:3', 'test_adjustedcif_S3.r:74:3', 'test_adjustedcif_S3.r:80:3', 'test_adjustedsurv.method_S3.r:15:3', 'test_adjustedsurv.method_S3.r:19:3', 'test_adjustedsurv_S3.r:17:3', 'test_adjustedsurv_S3.r:21:3', 'test_adjustedsurv_S3.r:26:3', 'test_adjustedsurv_S3.r:31:3', 'test_adjustedsurv_S3.r:36:3', 'test_adjustedsurv_S3.r:41:3', 'test_adjustedsurv_S3.r:46:3', 'test_adjustedsurv_S3.r:51:3', 'test_adjustedsurv_S3.r:56:3', 'test_adjustedsurv_S3.r:61:3', 'test_adjustedsurv_S3.r:66:3', 'test_adjustedsurv_S3.r:71:3', 'test_adjustedsurv_S3.r:76:3', 'test_adjustedsurv_S3.r:81:3', 'test_adjustedsurv_S3.r:86:3', 'test_adjustedsurv_S3.r:91:3', 'test_adjustedsurv_S3.r:96:3', 'test_adjustedsurv_S3.r:101:3', 'test_adjustedsurv_S3.r:107:3', 'test_adjustedsurv_S3.r:113:3', 'test_adjustedsurv_S3.r:119:3', 'test_curve_test_S3.r:21:3', 'test_curve_test_S3.r:25:3', 'test_plot.adjustedcif.r:22:3', 'test_plot.adjustedcif.r:28:3', 'test_plot.adjustedcif.r:34:3', 'test_plot.adjustedcif.r:40:3', 'test_plot.adjustedcif.r:50:3', 'test_plot.adjustedcif.r:61:3', 'test_plot.adjustedcif.r:76:3', 'test_plot.adjustedcif.r:92:3', 'test_plot.adjustedcif.r:100:3', 'test_plot.adjustedcif.r:106:3', 'test_plot.adjustedcif.r:112:3', 'test_plot.adjustedcif.r:118:3', 'test_plot.adjustedcif.r:124:3', 'test_plot.adjustedcif.r:131:3', 'test_plot.adjustedcif.r:137:3', 'test_plot.adjustedcif.r:143:3', 'test_plot.adjustedcif.r:154:3', 'test_plot.adjustedcif.r:160:3', 'test_plot.adjustedcif.r:166:3', 'test_plot.adjustedcif.r:172:3', 'test_plot.adjustedcif.r:178:3', 'test_plot.adjustedcif.r:184:3', 'test_plot.adjustedcif.r:191:3', 'test_plot.adjustedcif.r:220:3', 'test_plot.adjustedsurv.r:21:3', 'test_plot.adjustedsurv.r:27:3', 'test_plot.adjustedsurv.r:33:3', 'test_plot.adjustedsurv.r:39:3', 'test_plot.adjustedsurv.r:49:3', 'test_plot.adjustedsurv.r:60:3', 'test_plot.adjustedsurv.r:75:3', 'test_plot.adjustedsurv.r:91:3', 'test_plot.adjustedsurv.r:103:3', 'test_plot.adjustedsurv.r:109:3', 'test_plot.adjustedsurv.r:115:3', 'test_plot.adjustedsurv.r:121:3', 'test_plot.adjustedsurv.r:127:3', 'test_plot.adjustedsurv.r:133:3', 'test_plot.adjustedsurv.r:140:3', 'test_plot.adjustedsurv.r:146:3', 'test_plot.adjustedsurv.r:152:3', 'test_plot.adjustedsurv.r:158:3', 'test_plot.adjustedsurv.r:164:3', 'test_plot.adjustedsurv.r:175:3', 'test_plot.adjustedsurv.r:181:3', 'test_plot.adjustedsurv.r:187:3', 'test_plot.adjustedsurv.r:193:3', 'test_plot.adjustedsurv.r:199:3', 'test_plot.adjustedsurv.r:206:3', 'test_plot.adjustedsurv.r:239:3', 'test_plot_auc_curve.r:22:3', 'test_plot_auc_curve.r:28:3', 'test_plot_auc_curve.r:35:3', 'test_plot_auc_curve.r:41:3', 'test_plot_auc_curve.r:47:3', 'test_plot_auc_curve.r:53:3', 'test_plot_auc_curve.r:60:3', 'test_plot_auc_curve.r:67:3', 'test_plot_auc_curve.r:73:3', 'test_plot_auc_curve.r:80:3', 'test_plot_auc_curve.r:86:3', 'test_plot_curve_diff.r:21:3', 'test_plot_curve_diff.r:27:3', 'test_plot_curve_diff.r:33:3', 'test_plot_curve_diff.r:39:3', 'test_plot_curve_diff.r:45:3', 'test_plot_curve_diff.r:51:3', 'test_plot_curve_diff.r:57:3', 'test_plot_curve_diff.r:63:3', 'test_plot_curve_diff.r:69:3', 'test_plot_curve_diff.r:75:3', 'test_plot_curve_diff.r:81:3', 'test_plot_curve_diff.r:88:3', 'test_plot_curve_diff.r:95:3', 'test_plot_curve_diff.r:101:3', 'test_plot_curve_diff.r:107:3', 'test_plot_curve_diff.r:113:3', 'test_plot_curve_diff.r:119:3', 'test_plot_curve_diff.r:129:3', 'test_plot_curve_diff.r:137:3', 'test_plot_curve_diff.r:143:3', 'test_plot_curve_diff.r:152:3', 'test_plot_curve_diff.r:169:3', 'test_plot_curve_ratio.r:21:3', 'test_plot_curve_ratio.r:27:3', 'test_plot_curve_ratio.r:33:3', 'test_plot_curve_ratio.r:39:3', 'test_plot_curve_ratio.r:45:3', 'test_plot_curve_ratio.r:51:3', 'test_plot_curve_ratio.r:57:3', 'test_plot_curve_ratio.r:74:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_cif_tmle.r:12:3'): one model each ────────────────────────────── <packageNotFoundError/error/condition> Error in `loadNamespace(x)`: there is no package called 'concrete' Backtrace: ▆ 1. ├─adjustedCurves::adjustedcif(...) at test_cif_tmle.r:12:3 2. │ ├─R.utils::doCall(cif_fun, args = args) 3. │ ├─R.utils::doCall.default(cif_fun, args = args) 4. │ │ └─base::do.call(.fcn, args = args, envir = envir) 5. │ └─adjustedCurves (local) `<fn>`(...) 6. │ └─adjustedCurves:::method_tmle(...) 7. └─base::loadNamespace(x) 8. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 9. └─base (local) withOneRestart(expr, restarts[[1L]]) 10. └─base (local) doWithOneRestart(return(expr), restart) ── Error ('test_cif_tmle.r:28:3'): multiple models each ──────────────────────── <packageNotFoundError/error/condition> Error in `loadNamespace(x)`: there is no package called 'concrete' Backtrace: ▆ 1. ├─adjustedCurves::adjustedcif(...) at test_cif_tmle.r:28:3 2. │ ├─R.utils::doCall(cif_fun, args = args) 3. │ ├─R.utils::doCall.default(cif_fun, args = args) 4. │ │ └─base::do.call(.fcn, args = args, envir = envir) 5. │ └─adjustedCurves (local) `<fn>`(...) 6. │ └─adjustedCurves:::method_tmle(...) 7. └─base::loadNamespace(x) 8. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 9. └─base (local) withOneRestart(expr, restarts[[1L]]) 10. └─base (local) doWithOneRestart(return(expr), restart) ── Error ('test_cif_tmle.r:45:3'): no conf_int ───────────────────────────────── <packageNotFoundError/error/condition> Error in `loadNamespace(x)`: there is no package called 'concrete' Backtrace: ▆ 1. ├─adjustedCurves::adjustedcif(...) at test_cif_tmle.r:45:3 2. │ ├─R.utils::doCall(cif_fun, args = args) 3. │ ├─R.utils::doCall.default(cif_fun, args = args) 4. │ │ └─base::do.call(.fcn, args = args, envir = envir) 5. │ └─adjustedCurves (local) `<fn>`(...) 6. │ └─adjustedCurves:::method_tmle(...) 7. └─base::loadNamespace(x) 8. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 9. └─base (local) withOneRestart(expr, restarts[[1L]]) 10. └─base (local) doWithOneRestart(return(expr), restart) ── Error ('test_cif_tmle.r:62:3'): changing some arguments ───────────────────── <packageNotFoundError/error/condition> Error in `loadNamespace(x)`: there is no package called 'concrete' Backtrace: ▆ 1. ├─adjustedCurves::adjustedcif(...) at test_cif_tmle.r:62:3 2. │ ├─R.utils::doCall(cif_fun, args = args) 3. │ ├─R.utils::doCall.default(cif_fun, args = args) 4. │ │ └─base::do.call(.fcn, args = args, envir = envir) 5. │ └─adjustedCurves (local) `<fn>`(...) 6. │ └─adjustedCurves:::method_tmle(...) 7. └─base::loadNamespace(x) 8. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 9. └─base (local) withOneRestart(expr, restarts[[1L]]) 10. └─base (local) doWithOneRestart(return(expr), restart) ── Error ('test_surv_tmle.r:11:3'): one model each ───────────────────────────── <packageNotFoundError/error/condition> Error in `loadNamespace(x)`: there is no package called 'concrete' Backtrace: ▆ 1. ├─adjustedCurves::adjustedsurv(...) at test_surv_tmle.r:11:3 2. │ ├─R.utils::doCall(surv_fun, args = args) 3. │ ├─R.utils::doCall.default(surv_fun, args = args) 4. │ │ └─base::do.call(.fcn, args = args, envir = envir) 5. │ └─adjustedCurves (local) `<fn>`(...) 6. │ └─adjustedCurves:::method_tmle(...) 7. └─base::loadNamespace(x) 8. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 9. └─base (local) withOneRestart(expr, restarts[[1L]]) 10. └─base (local) doWithOneRestart(return(expr), restart) ── Error ('test_surv_tmle.r:26:3'): multiple models each ─────────────────────── <packageNotFoundError/error/condition> Error in `loadNamespace(x)`: there is no package called 'concrete' Backtrace: ▆ 1. ├─adjustedCurves::adjustedsurv(...) at test_surv_tmle.r:26:3 2. │ ├─R.utils::doCall(surv_fun, args = args) 3. │ ├─R.utils::doCall.default(surv_fun, args = args) 4. │ │ └─base::do.call(.fcn, args = args, envir = envir) 5. │ └─adjustedCurves (local) `<fn>`(...) 6. │ └─adjustedCurves:::method_tmle(...) 7. └─base::loadNamespace(x) 8. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 9. └─base (local) withOneRestart(expr, restarts[[1L]]) 10. └─base (local) doWithOneRestart(return(expr), restart) ── Error ('test_surv_tmle.r:42:3'): no conf_int ──────────────────────────────── <packageNotFoundError/error/condition> Error in `loadNamespace(x)`: there is no package called 'concrete' Backtrace: ▆ 1. ├─adjustedCurves::adjustedsurv(...) at test_surv_tmle.r:42:3 2. │ ├─R.utils::doCall(surv_fun, args = args) 3. │ ├─R.utils::doCall.default(surv_fun, args = args) 4. │ │ └─base::do.call(.fcn, args = args, envir = envir) 5. │ └─adjustedCurves (local) `<fn>`(...) 6. │ └─adjustedCurves:::method_tmle(...) 7. └─base::loadNamespace(x) 8. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 9. └─base (local) withOneRestart(expr, restarts[[1L]]) 10. └─base (local) doWithOneRestart(return(expr), restart) ── Error ('test_surv_tmle.r:58:3'): changing some arguments ──────────────────── <packageNotFoundError/error/condition> Error in `loadNamespace(x)`: there is no package called 'concrete' Backtrace: ▆ 1. ├─adjustedCurves::adjustedsurv(...) at test_surv_tmle.r:58:3 2. │ ├─R.utils::doCall(surv_fun, args = args) 3. │ ├─R.utils::doCall.default(surv_fun, args = args) 4. │ │ └─base::do.call(.fcn, args = args, envir = envir) 5. │ └─adjustedCurves (local) `<fn>`(...) 6. │ └─adjustedCurves:::method_tmle(...) 7. └─base::loadNamespace(x) 8. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 9. └─base (local) withOneRestart(expr, restarts[[1L]]) 10. └─base (local) doWithOneRestart(return(expr), restart) [ FAIL 8 | WARN 10 | SKIP 135 | PASS 1608 ] Error: Test failures Execution halted Flavor: r-patched-linux-x86_64