Last updated on 2024-04-25 08:00:22 CEST.
Package | ERROR | NOTE | OK |
---|---|---|---|
ade4 | 11 | 1 | |
ade4TkGUI | 12 | ||
adegraphics | 3 | 9 | |
adephylo | 12 | ||
adespatial | 12 | ||
CINID | 12 | ||
DRomics | 1 | 8 | 4 |
fitdistrplus | 12 | ||
Interatrix | 12 | ||
LDcorSV | 12 | ||
LifemapR | 13 | ||
MareyMap | 13 | ||
Mondrian | 12 | ||
nlsMicrobio | 13 | ||
nlstools | 13 | ||
OnAge | 12 | ||
phylter | 8 | 4 |
Current CRAN status: NOTE: 11, OK: 1
Version: 1.7-22
Check: Rd files
Result: NOTE
checkRd: (-1) varipart.Rd:19: Lost braces
19 | \item{type}{a character specifying the algorithm which should be used to adjust R-squared (either \code{"simulated"} or \ code{"parametric"}).}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64
Version: 1.7-22
Check: installed package size
Result: NOTE
installed size is 6.4Mb
sub-directories of 1Mb or more:
R 1.4Mb
data 3.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.7-22
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘sp’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Current CRAN status: OK: 12
Current CRAN status: NOTE: 3, OK: 9
Version: 1.0-21
Check: installed package size
Result: NOTE
installed size is 5.3Mb
sub-directories of 1Mb or more:
R 2.0Mb
doc 2.7Mb
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: ERROR: 1, NOTE: 8, OK: 4
Version: 2.5-2
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘sva’
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2.5-2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘DRomics_vignette.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/DRomics.Rcheck/vign_test/DRomics/vignettes/DRomics_vignette_files/figure-html/unnamed-chunk-6-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29807 bytes
Input file size = 29921 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20387
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20387
Output IDAT size = 20387 bytes (9420 bytes decrease)
Output file size = 20465 bytes (9456 bytes = 31.60% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/DRomics.Rcheck/vign_test/DRomics/vignettes/DRomics_vignette_files/figure-html/unnamed-chunk-8-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31545 bytes
Input file size = 31659 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23736
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23736
Output IDAT size = 23736 bytes (7809 bytes decrease)
Output file size = 23814 bytes (7845 bytes = 24.78% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/DRomics.Rcheck/vign_test/DRomics/vignettes/DRomics_vignette_files/figure-html/unnamed-chunk-10-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 23824 bytes
Input file size = 23926 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18004
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18004
Output IDAT size = 18004 bytes (5820 bytes decrease)
Output file size = 18082 bytes (5844 bytes = 24.43% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/DRomics.Rcheck/vign_test/DRomics/vignettes/DRomics_vignette_files/figure-html/unnamed-chunk-12-1.png
672x288 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8993 bytes
Input file size = 9860 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7856
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7849
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7849
Output IDAT size = 7849 bytes (1144 bytes decrease)
Output file size = 7927 bytes (1933 bytes = 19.60% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/DRomics.Rcheck/vign_test/DRomics/vignettes/DRomics_vignette_files/figure-html/unnamed-chunk-13-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 17302 bytes
Input file size = 18184 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15959
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15959
Output IDAT size = 15959 bytes (1343 bytes decrease)
Output file size = 16037 bytes (2147 bytes = 11.81% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/DRomics.Rcheck/vign_test/DRomics/vignettes/DRomics_vignette_files/figure-html/unnamed-chunk-15-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16899 bytes
Input file size = 17001 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15223
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 15212
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 15212
Output IDAT size = 15212 bytes (1687 bytes decrease)
Output file size = 15290 bytes (1711 bytes = 10.06% decrease)
Quitting from lines at lines 434-439 [unnamed-chunk-16] (DRomics_vignette.Rmd)
Error: processing vignette 'DRomics_vignette.Rmd' failed with diagnostics:
could not find function "ComBat_seq"
--- failed re-building ‘DRomics_vignette.Rmd’
SUMMARY: processing the following file failed:
‘DRomics_vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2.5-2
Check: installed package size
Result: NOTE
installed size is 6.1Mb
sub-directories of 1Mb or more:
doc 2.9Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 12
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 12
Current CRAN status: NOTE: 8, OK: 4
Version: 0.9.11
Check: Rd files
Result: NOTE
checkRd: (-1) phylter.Rd:51: Lost braces; missing escapes or markup?
51 | the output ({out$DiscardedGenes}).}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64