pctax: Professional Comprehensive Omics Data Analysis
Provides a comprehensive suite of tools for analyzing omics data. It includes functionalities for alpha diversity analysis, beta diversity analysis, differential abundance analysis, community assembly analysis, visualization of phylogenetic tree, and functional enrichment analysis. With a progressive approach, the package offers a range of analysis methods to explore and understand the complex communities. It is designed to support researchers and practitioners in conducting in-depth and professional omics data analysis.
| Version: | 0.1.3 |
| Depends: | R (≥ 4.2.0) |
| Imports: | pcutils (≥ 0.2.5), dplyr, ggplot2 (≥ 3.2.0), vegan, magrittr, grDevices, RColorBrewer, ggrepel, reshape2, stats, tibble, utils, ggpubr, ggnewscale, ade4, scales |
| Suggests: | picante, httr, NST, permute, aplot, pheatmap, MASS, Rtsne, mixOmics, geosphere, phyloseq, phyloseqGraphTest, plotly, umap, Hmisc, minpack.lm, bbmle, snow, foreach, doSNOW, patchwork, tidytree, ggtree, ggtreeExtra, vctrs, zoo, ape, DESeq2, limma, ALDEx2, Mfuzz, edgeR, methods, randomForest, knitr, rmarkdown, MetaNet, showtext, jsonlite, prettydoc, readxl, clipr, zetadiv, ggforce |
| Published: | 2024-12-02 |
| DOI: | 10.32614/CRAN.package.pctax |
| Author: | Chen Peng  [aut,
cre] |
| Maintainer: | Chen Peng <pengchen2001 at zju.edu.cn> |
| BugReports: | https://github.com/Asa12138/pctax/issues |
| License: | GPL-3 |
| URL: | https://github.com/Asa12138/pctax |
| NeedsCompilation: | no |
| Citation: | pctax citation info |
| Materials: | README NEWS |
| CRAN checks: | pctax results |
Documentation:
| Reference manual: | pctax.pdf |
| Vignettes: |
pctax (source, R code) |
Downloads:
| Package source: | pctax_0.1.3.tar.gz |
| Windows binaries: | r-devel: pctax_0.1.3.zip, r-release: pctax_0.1.3.zip, r-oldrel: pctax_0.1.3.zip |
| macOS binaries: | r-devel (arm64): pctax_0.1.3.tgz, r-release (arm64): pctax_0.1.3.tgz, r-oldrel (arm64): pctax_0.1.3.tgz, r-devel (x86_64): pctax_0.1.3.tgz, r-release (x86_64): pctax_0.1.3.tgz, r-oldrel (x86_64): pctax_0.1.3.tgz |
| Old sources: | pctax archive |
Linking:
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