tidytree: A Tidy Tool for Phylogenetic Tree Data Manipulation

Phylogenetic tree generally contains multiple components including node, edge, branch and associated data. 'tidytree' provides an approach to convert tree object to tidy data frame as well as provides tidy interfaces to manipulate tree data.

Version: 0.4.6
Depends: R (≥ 3.4.0)
Imports: ape, dplyr, lazyeval, magrittr, methods, rlang, tibble, tidyr, tidyselect, yulab.utils (≥ 0.0.4), pillar, cli
Suggests: knitr, rmarkdown, prettydoc, testthat, utils
Published: 2023-12-12
DOI: 10.32614/CRAN.package.tidytree
Author: Guangchuang Yu ORCID iD [aut, cre, cph], Bradley Jones [ctb], Zebulun Arendsee [ctb]
Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>
BugReports: https://github.com/YuLab-SMU/tidytree/issues
License: Artistic-2.0
URL: https://www.amazon.com/Integration-Manipulation-Visualization-Phylogenetic-Computational-ebook/dp/B0B5NLZR1Z/
NeedsCompilation: no
Citation: tidytree citation info
Materials: NEWS
In views: Phylogenetics
CRAN checks: tidytree results

Documentation:

Reference manual: tidytree.pdf
Vignettes: tidytree

Downloads:

Package source: tidytree_0.4.6.tar.gz
Windows binaries: r-devel: tidytree_0.4.6.zip, r-release: tidytree_0.4.6.zip, r-oldrel: tidytree_0.4.6.zip
macOS binaries: r-devel (arm64): tidytree_0.4.6.tgz, r-release (arm64): tidytree_0.4.6.tgz, r-oldrel (arm64): tidytree_0.4.6.tgz, r-devel (x86_64): tidytree_0.4.6.tgz, r-release (x86_64): tidytree_0.4.6.tgz, r-oldrel (x86_64): tidytree_0.4.6.tgz
Old sources: tidytree archive

Reverse dependencies:

Reverse imports: avotrex, FossilSim, ggtree, ggtreeDendro, ggtreeExtra, iNEXT.3D, iNEXT.beta3D, miaViz, microbiomeMarker, MicrobiotaProcess, oppr, RevGadgets, sitePath, treeio
Reverse suggests: compcodeR, DAISIE, nosoi, pctax, Platypus

Linking:

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