CDMConnector: Connect to an OMOP Common Data Model
Provides tools for working with observational health data in the Observational Medical Outcomes Partnership (OMOP) Common Data Model format with a pipe friendly syntax. Common data model database table references are stored in a single compound object along with metadata.
| Version: | 1.7.0 |
| Depends: | R (≥ 4.0) |
| Imports: | dplyr, dbplyr (≥ 2.5.0), DBI (≥ 0.3.0), checkmate, cli, purrr, rlang, tidyselect, glue, methods, withr, lifecycle, stringr, stringi, generics, tidyr, jsonlite, readr, omopgenerics (≥ 0.1.2) |
| Suggests: | SqlRender, CirceR, rJava, covr, knitr, rmarkdown, duckdb, RSQLite, RPostgres, DatabaseConnector, odbc, ggplot2, bigrquery, lubridate, clock, tibble, testthat (≥ 3.0.0), pool, snakecase, palmerpenguins |
| Enhances: | arrow |
| Published: | 2024-12-19 |
| DOI: | 10.32614/CRAN.package.CDMConnector |
| Author: | Adam Black  [aut,
cre],
Artem Gorbachev [aut],
Edward Burn [aut],
Marti Catala Sabate [aut] |
| Maintainer: | Adam Black <black at ohdsi.org> |
| BugReports: | https://github.com/darwin-eu/CDMConnector/issues |
| License: | Apache License (≥ 2) |
| URL: | https://darwin-eu.github.io/CDMConnector/, https://github.com/darwin-eu/CDMConnector |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | CDMConnector results |
Documentation:
| Reference manual: | CDMConnector.pdf |
| Vignettes: |
Getting Started (source, R code) Working with cohorts (source, R code) CDMConnector and dbplyr (source, R code) DBI connection examples (source, R code) CDM reference backends (source, R code) Using CDM attributes (source, R code) |
Downloads:
| Package source: | CDMConnector_1.7.0.tar.gz |
| Windows binaries: | r-devel: CDMConnector_1.6.1.zip, r-release: CDMConnector_1.7.0.zip, r-oldrel: CDMConnector_1.7.0.zip |
| macOS binaries: | r-release (arm64): CDMConnector_1.7.0.tgz, r-oldrel (arm64): CDMConnector_1.7.0.tgz, r-release (x86_64): CDMConnector_1.7.0.tgz, r-oldrel (x86_64): CDMConnector_1.7.0.tgz |
| Old sources: | CDMConnector archive |
Reverse dependencies:
| Reverse imports: | CohortCharacteristics, CohortConstructor, CohortSurvival, CohortSymmetry, DrugExposureDiagnostics, DrugUtilisation, IncidencePrevalence, OmopSketch, PatientProfiles, TestGenerator |
| Reverse suggests: | CodelistGenerator, OmopViewer, PhenotypeR, TreatmentPatterns |
Linking:
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